JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD1A_chr1_158249424_158263269	0/0	g0035	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0036	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0037	1	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0038	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0039	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0040	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0041	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0042	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0043	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0044	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0045	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0046	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0047	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0048	1	0	0	0	0	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0049	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0050	1	0	0	0	1	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0051	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0052	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0053	1	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0054	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0055	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0056	1	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0057	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0058	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0059	1	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0060	1	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0061	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0062	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1B_chr1_158322955_158336531	1/1	g0001	132	9	35	69	3	14	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0002	112	14	23	57	6	12	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0003	74	6	7	52	1	8	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0004	23	23	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0005	15	0	1	13	0	1	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0006	14	14	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0007	13	12	1	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0008	9	0	0	9	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0009	9	0	0	9	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0010	7	7	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0011	4	0	2	0	0	2	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0012	4	4	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0013	2	0	0	0	0	2	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0014	2	0	2	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0015	2	0	0	0	0	2	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0016	2	2	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0017	2	2	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0018	2	0	1	0	1	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0019	2	0	0	0	0	2	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0020	1	0	0	1	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0021	1	1	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0022	1	0	0	1	0	0	CD1B	chr1	158322955	158336531