JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD1B_chr1_158322955_158336531	0/0	g0023	1	0	0	1	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0024	1	1	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0025	1	0	1	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0026	1	0	1	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0027	1	0	0	0	1	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0028	1	1	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0029	1	1	0	0	0	0	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0030	1	0	0	0	0	1	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	g0031	1	1	0	0	0	0	CD1B	chr1	158322955	158336531
CD1C_chr1_158284923_158299774	1/1	g0001	405	70	67	208	13	45	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0002	6	0	3	0	3	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0003	6	6	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0004	5	4	1	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0005	4	2	0	0	0	2	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0006	4	4	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0007	3	0	0	3	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0008	2	2	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0009	2	2	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0010	1	0	1	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0011	1	0	0	1	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0012	1	0	0	1	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0013	1	1	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0014	1	0	0	1	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0015	1	0	0	0	0	1	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0016	1	1	0	0	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0017	1	0	0	1	0	0	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	g0018	1	0	0	1	0	0	CD1C	chr1	158284923	158299774
CD1D_chr1_158175895_158191427	1/0	g0001	186	57	30	63	9	26	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/1	g0002	140	23	31	77	3	5	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0003	99	9	7	71	2	10	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0004	2	0	2	0	0	0	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0005	2	0	0	0	0	2	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0006	1	1	0	0	0	0	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0007	1	0	0	1	0	0	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0008	1	1	0	0	0	0	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0009	1	1	0	0	0	0	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	g0010	1	0	0	0	0	1	CD1D	chr1	158175895	158191427
CD1E_chr1_158348894_158362553	1/1	g0001	243	12	44	146	8	31	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0002	94	12	19	48	6	9	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0003	27	22	3	0	0	2	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0004	15	0	3	12	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0005	13	13	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0006	12	11	1	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0007	7	7	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0008	7	7	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0009	3	1	0	2	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0010	3	0	0	0	0	3	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0011	2	0	0	2	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0012	2	2	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0013	2	2	0	0	0	0	CD1E	chr1	158348894	158362553