JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD1E_chr1_158348894_158362553	0/0	g0014	1	0	0	1	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0015	1	0	0	0	0	1	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0016	1	0	0	1	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0017	1	1	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0018	1	1	0	0	0	0	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	g0019	1	1	0	0	0	0	CD1E	chr1	158348894	158362553
CD200R1L_chr3_112810711_112851864	0/0	g0001	38	4	5	22	1	6	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0002	24	0	0	23	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0003	14	0	2	12	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0004	11	1	5	0	2	3	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/1	g0005	8	0	2	1	2	2	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0006	7	0	4	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0007	6	0	0	6	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0008	6	0	0	6	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0009	6	0	0	6	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0010	6	0	2	4	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0011	6	0	4	2	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0012	5	0	1	0	1	3	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0013	5	0	0	5	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0014	5	4	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0015	4	0	0	3	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0016	4	0	3	0	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0017	4	4	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0018	3	0	0	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0019	3	3	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0020	3	3	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0021	3	0	0	0	0	3	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0022	3	0	0	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0023	3	0	0	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0024	3	0	0	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0025	3	0	2	0	1	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0026	3	0	1	1	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0027	3	0	1	0	2	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0028	3	0	0	3	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0029	3	3	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0030	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0031	2	0	0	2	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0032	2	0	0	1	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0033	2	0	2	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0034	2	0	2	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0035	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0036	2	0	2	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0037	2	0	1	0	1	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0038	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0039	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0040	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0041	2	2	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0042	2	0	0	2	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0043	2	0	2	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0044	2	0	0	0	0	2	CD200R1L	chr3	112810711	112851864