JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD200R1L_chr3_112810711_112851864	0/0	g0195	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0196	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0197	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0198	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0199	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0200	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0201	1	0	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0202	1	0	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0203	1	0	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0204	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0205	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0206	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0207	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0208	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0209	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0210	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0211	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0212	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0213	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0214	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0215	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0216	1	1	0	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0217	1	0	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0218	1	0	0	0	0	1	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0219	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0220	1	0	1	0	0	0	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	g0221	1	0	0	1	0	0	CD200R1L	chr3	112810711	112851864
CD200R1_chr3_112916205_112980103	0/0	g0001	23	0	1	21	0	1	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0002	16	0	4	9	1	2	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0003	16	0	1	13	0	2	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0004	10	0	0	10	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0005	10	9	0	0	0	1	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0006	9	0	1	8	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0007	8	8	0	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0008	7	0	3	4	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0009	7	0	4	3	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0010	5	0	4	1	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0011	5	0	2	0	0	3	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0012	5	0	4	0	1	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0013	5	0	0	5	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0014	4	0	2	0	0	2	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0015	4	0	0	4	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0016	4	0	4	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0017	4	3	1	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0018	4	0	0	4	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0019	4	4	0	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0020	3	0	3	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0021	3	3	0	0	0	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0022	3	0	1	0	2	0	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	g0023	3	0	0	3	0	0	CD200R1	chr3	112916205	112980103