JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD200_chr3_112328156_112367812	0/0	g0338	1	1	0	0	0	0	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	g0339	1	1	0	0	0	0	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	g0340	1	1	0	0	0	0	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	g0341	1	0	0	0	0	1	CD200	chr3	112328156	112367812
CD207_chr2_70825211_70840816	0/1	g0001	78	4	16	49	3	5	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0002	40	1	5	33	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0003	19	0	0	17	0	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0004	18	2	11	1	2	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0005	14	3	8	2	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0006	13	12	1	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0007	12	0	5	3	2	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0008	11	0	4	4	1	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0009	11	0	0	11	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0010	10	0	0	10	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0011	10	1	1	5	1	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0012	10	0	0	5	1	4	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0013	7	0	0	6	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	1/0	g0014	7	0	1	4	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0015	6	0	0	6	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0016	5	5	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0017	5	0	0	5	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0018	4	4	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0019	4	2	0	0	0	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0020	4	2	1	1	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0021	4	2	1	0	1	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0022	4	0	4	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0023	4	0	0	4	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0024	3	0	0	3	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0025	3	0	2	0	1	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0026	3	2	1	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0027	3	3	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0028	3	0	0	3	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0029	3	3	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0030	3	3	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0031	3	0	0	3	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0032	3	0	0	2	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0033	2	0	0	0	0	2	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0034	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0035	2	0	0	2	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0036	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0037	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0038	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0039	2	0	0	2	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0040	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0041	2	1	0	0	0	1	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0042	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0043	2	0	2	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0044	2	0	0	2	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0045	2	2	0	0	0	0	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	g0046	2	0	0	0	0	2	CD207	chr2	70825211	70840816