JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD24_chr6_106964831_106979729	0/1	g0005	21	1	4	13	1	1	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0006	15	1	2	8	0	4	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0007	10	10	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0008	9	0	0	9	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0009	9	9	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0010	8	8	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0011	4	0	0	4	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0012	4	4	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0013	3	3	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0014	3	3	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0015	2	2	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0016	2	0	0	2	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0017	2	2	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0018	2	1	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0019	2	0	0	2	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0020	2	1	0	0	0	1	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0021	2	0	1	0	0	1	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0022	2	2	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0023	2	2	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0024	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0025	1	0	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0026	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0027	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0028	1	0	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0029	1	0	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0030	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0031	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0032	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0033	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0034	1	0	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0035	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0036	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0037	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0038	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0039	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0040	1	0	0	0	0	1	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0041	1	0	1	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0042	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0043	1	1	0	0	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0044	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0045	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0046	1	0	0	0	1	0	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	g0047	1	0	0	1	0	0	CD24	chr6	106964831	106979729
CD274_chr9_5445542_5475554	0/1	g0001	45	0	5	34	2	3	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0002	41	6	14	10	4	7	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0003	31	0	7	18	0	6	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0004	17	0	4	11	0	2	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0005	15	0	0	14	0	1	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0006	11	0	2	9	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0007	11	0	0	11	0	0	CD274	chr9	5445542	5475554