JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD274_chr9_5445542_5475554	0/0	g0158	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0159	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0160	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0161	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0162	1	0	0	1	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0163	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0164	1	0	0	0	0	1	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0165	1	0	0	1	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0166	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	g0167	1	1	0	0	0	0	CD274	chr9	5445542	5475554
CD276_chr15_73679383_73719514	0/0	g0001	18	2	7	6	3	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0002	6	0	0	5	0	1	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0003	6	0	4	0	2	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0004	6	0	0	6	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0005	5	1	4	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0006	5	5	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0007	4	0	0	4	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0008	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0009	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0010	3	0	2	1	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0011	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0012	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0013	3	0	1	1	0	1	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0014	3	0	1	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0015	3	1	0	1	0	1	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0016	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0017	3	3	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0018	3	2	1	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0019	3	0	0	3	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0020	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0021	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0022	2	2	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0023	2	1	1	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0024	2	2	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0025	2	0	0	0	2	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0026	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0027	2	2	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0028	2	0	1	1	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0029	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0030	2	0	1	1	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0031	2	2	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0032	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0033	2	1	0	0	0	1	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0034	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0035	2	0	0	1	0	1	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0036	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0037	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0038	2	0	0	2	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0039	2	2	0	0	0	0	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	g0040	2	0	0	2	0	0	CD276	chr15	73679383	73719514