JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD2BP2_chr16_30345773_30360308	0/0	g0005	21	21	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0006	15	0	11	0	3	1	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	1/0	g0007	9	7	1	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0008	6	6	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0009	5	5	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0010	3	0	0	3	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0011	3	0	0	3	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0012	2	0	0	0	0	2	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0013	2	0	1	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0014	2	0	0	2	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0015	2	2	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0016	1	1	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0017	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0018	1	0	0	0	0	1	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0019	1	1	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0020	1	0	1	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0021	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0022	1	0	1	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0023	1	0	0	0	0	1	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0024	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0025	1	0	0	0	1	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0026	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0027	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0028	1	1	0	0	0	0	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	g0029	1	0	0	1	0	0	CD2BP2	chr16	30345773	30360308
CD2_chr1_116749430_116774229	0/0	g0001	23	0	4	19	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0002	22	1	3	15	1	2	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	1/0	g0003	17	1	5	7	1	2	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0004	12	0	2	6	1	3	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0005	10	2	1	4	2	1	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0006	10	0	0	10	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0007	9	0	0	9	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0008	9	2	0	7	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0009	7	0	1	3	1	2	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0010	6	0	0	6	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0011	6	0	1	4	0	1	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0012	6	0	1	3	0	2	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0013	6	0	0	6	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0014	6	0	0	6	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0015	5	0	2	3	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0016	5	0	1	4	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0017	5	4	1	0	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0018	5	0	5	0	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/1	g0019	5	0	2	0	1	1	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0020	4	0	0	4	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0021	4	0	4	0	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0022	4	4	0	0	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0023	4	0	0	4	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0024	4	0	0	4	0	0	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	g0025	4	0	2	2	0	0	CD2	chr1	116749430	116774229