JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD300A_chr17_74461634_74489794	0/0	g0247	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0248	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0249	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0250	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0251	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0252	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0253	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0254	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0255	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0256	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0257	1	0	0	0	0	1	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0258	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0259	1	0	0	0	0	1	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0260	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0261	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0262	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0263	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0264	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0265	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0266	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0267	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0268	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0269	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0270	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0271	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0272	1	1	0	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0273	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0274	1	0	0	0	0	1	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0275	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0276	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0277	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0278	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0279	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0280	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0281	1	0	1	0	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0282	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	g0283	1	0	0	1	0	0	CD300A	chr17	74461634	74489794
CD300C_chr17_74536073_74551115	1/1	g0001	113	5	33	57	9	7	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0002	86	1	18	49	4	14	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0003	45	2	5	33	1	4	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0004	17	13	4	0	0	0	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0005	13	12	1	0	0	0	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0006	13	0	2	10	0	1	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0007	13	10	1	0	0	2	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0008	8	2	2	3	0	1	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0009	7	6	1	0	0	0	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0010	7	0	1	0	0	6	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0011	5	0	2	0	0	3	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0012	5	0	0	5	0	0	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0013	3	3	0	0	0	0	CD300C	chr17	74536073	74551115