JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD300C_chr17_74536073_74551115	0/0	g0064	1	0	0	0	0	1	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0065	1	0	1	0	0	0	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	g0066	1	1	0	0	0	0	CD300C	chr17	74536073	74551115
CD300E_chr17_74604885_74628738	1/0	g0001	43	2	9	26	1	4	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0002	24	1	6	10	4	3	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/1	g0003	20	1	9	3	2	4	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0004	14	1	2	10	0	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0005	14	9	0	5	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0006	12	0	1	11	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0007	9	0	2	7	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0008	9	7	2	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0009	6	6	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0010	6	1	3	0	2	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0011	6	0	0	6	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0012	6	0	0	6	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0013	5	0	0	4	0	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0014	5	0	0	5	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0015	5	0	0	5	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0016	5	0	0	5	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0017	4	0	0	4	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0018	4	0	0	4	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0019	4	0	2	2	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0020	4	0	2	0	0	2	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0021	4	0	1	3	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0022	4	0	0	4	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0023	4	0	0	4	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0024	3	3	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0025	3	1	1	0	1	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0026	3	0	0	3	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0027	3	0	3	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0028	3	0	0	3	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0029	3	2	0	0	0	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0030	3	0	2	1	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0031	3	2	1	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0032	3	0	0	3	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0033	3	2	1	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0034	2	0	0	0	0	2	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0035	2	0	2	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0036	2	0	1	0	0	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0037	2	1	0	0	0	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0038	2	2	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0039	2	0	2	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0040	2	2	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0041	2	2	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0042	2	0	0	0	1	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0043	2	1	0	1	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0044	2	0	2	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0045	2	2	0	0	0	0	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0046	2	0	0	0	1	1	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	g0047	2	0	0	2	0	0	CD300E	chr17	74604885	74628738