JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD300LB_chr17_74516174_74536475	0/0	g0085	1	0	1	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0086	1	0	1	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0087	1	0	1	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0088	1	0	1	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0089	1	0	0	0	0	1	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0090	1	0	0	1	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0091	1	0	0	0	0	1	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0092	1	0	0	1	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0093	1	0	0	1	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0094	1	0	0	0	0	1	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0095	1	0	0	0	0	1	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0096	1	0	0	1	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0097	1	1	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0098	1	0	0	1	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/1	g0099	1	0	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0100	1	0	0	0	0	1	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0101	1	1	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0102	1	1	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0103	1	1	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0104	1	1	0	0	0	0	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	g0105	1	0	1	0	0	0	CD300LB	chr17	74516174	74536475
CD300LD_chr17_74574365_74597283	0/0	g0001	58	3	14	27	6	8	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	1/0	g0002	47	1	5	31	1	8	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0003	35	0	11	23	0	1	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0004	29	1	1	25	0	2	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0005	14	4	2	2	4	2	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0006	12	6	0	5	1	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0007	9	0	0	9	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0008	8	0	4	2	0	2	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0009	7	0	0	6	0	1	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0010	5	5	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0011	5	0	0	5	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0012	5	0	2	0	0	3	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0013	5	0	3	2	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0014	4	3	1	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0015	3	3	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0016	3	0	0	2	0	1	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0017	3	3	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0018	3	3	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0019	3	0	0	0	0	3	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0020	3	2	1	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0021	3	0	0	3	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0022	3	3	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0023	3	0	0	3	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0024	3	0	0	3	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0025	3	0	1	0	2	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0026	3	2	0	0	0	1	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0027	3	3	0	0	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0028	3	0	2	1	0	0	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	g0029	2	0	0	2	0	0	CD300LD	chr17	74574365	74597283