JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD300LF_chr17_74689317_74717923	0/0	g0217	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0218	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0219	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0220	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0221	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0222	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0223	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0224	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0225	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0226	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0227	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0228	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0229	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0230	1	0	0	0	0	1	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0231	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0232	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0233	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0234	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0235	1	0	0	0	1	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0236	1	0	1	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0237	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0238	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0239	1	0	0	1	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0240	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0241	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0242	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0243	1	0	1	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0244	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0245	1	1	0	0	0	0	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	g0246	1	0	0	0	0	1	CD300LF	chr17	74689317	74717923
CD300LG_chr17_43842176_43868639	1/1	g0001	74	15	21	21	4	11	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0002	17	5	6	0	3	3	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0003	11	11	0	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0004	8	0	4	0	3	1	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0005	7	0	0	5	1	1	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0006	6	0	0	4	0	2	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0007	6	0	2	3	0	1	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0008	5	1	4	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0009	5	0	5	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0010	4	0	0	4	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0011	4	0	0	4	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0012	4	1	1	1	0	1	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0013	4	0	0	4	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0014	4	1	3	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0015	3	3	0	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0016	3	0	0	3	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0017	3	0	3	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0018	3	3	0	0	0	0	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0019	3	0	0	1	0	2	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	g0020	3	0	3	0	0	0	CD300LG	chr17	43842176	43868639