JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD38_chr4_15773328_15858232	0/0	g0311	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0312	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0313	1	0	0	0	1	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0314	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0315	1	0	0	0	0	1	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0316	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0317	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0318	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0319	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0320	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0321	1	0	0	0	0	1	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0322	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0323	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0324	1	0	0	0	0	1	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0325	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0326	1	1	0	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0327	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0328	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0329	1	0	0	1	0	0	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	g0330	1	0	1	0	0	0	CD38	chr4	15773328	15858232
CD3D_chr11_118334075_118347705	1/0	g0001	96	23	21	39	2	10	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0002	71	1	13	48	6	3	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0003	62	5	5	43	1	8	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0004	38	0	2	31	0	5	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0005	24	3	5	14	0	2	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0006	19	1	9	1	0	8	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0007	16	5	8	1	2	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0008	10	8	0	2	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0009	8	8	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0010	7	7	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0011	7	0	1	2	0	4	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0012	6	5	1	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0013	6	0	3	1	2	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0014	6	3	0	0	0	3	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0015	4	3	1	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0016	4	0	2	1	1	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0017	4	0	0	4	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0018	3	3	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0019	3	3	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0020	3	0	0	2	0	1	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/1	g0021	3	0	2	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0022	2	0	1	0	1	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0023	2	2	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0024	2	0	2	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0025	2	0	0	1	0	1	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0026	2	0	0	1	0	1	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0027	2	0	0	0	0	2	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0028	2	0	1	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0029	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0030	1	1	0	0	0	0	CD3D	chr11	118334075	118347705