JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD3D_chr11_118334075_118347705	0/0	g0031	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0032	1	0	1	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0033	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0034	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0035	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0036	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0037	1	0	0	0	1	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0038	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0039	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0040	1	0	0	0	0	1	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0041	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0042	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0043	1	1	0	0	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0044	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0045	1	0	0	1	0	0	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	g0046	1	0	0	0	0	1	CD3D	chr11	118334075	118347705
CD3E_chr11_118299730_118321173	0/0	g0001	73	1	18	45	2	7	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/1	g0002	48	0	9	34	1	3	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0003	39	0	2	32	4	1	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0004	19	1	7	8	1	2	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0005	17	0	12	0	1	4	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0006	13	0	0	13	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0007	8	0	0	8	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0008	8	7	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0009	8	8	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0010	7	7	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0011	7	7	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0012	7	6	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0013	6	0	0	6	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0014	6	0	0	6	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0015	6	6	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0016	6	5	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0017	6	0	4	1	0	1	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0018	6	0	2	1	1	2	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0019	5	0	0	0	0	5	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0020	4	3	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0021	4	0	0	4	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0022	4	0	0	0	0	4	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0023	4	0	0	4	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0024	3	3	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0025	3	3	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0026	3	0	3	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0027	3	2	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0028	3	0	0	3	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0029	3	0	0	0	0	3	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0030	3	0	0	3	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0031	2	2	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0032	2	2	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0033	2	1	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0034	2	2	0	0	0	0	CD3E	chr11	118299730	118321173