JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD3E_chr11_118299730_118321173	0/0	g0085	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0086	1	0	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0087	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0088	1	0	0	0	0	1	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0089	1	0	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0090	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0091	1	1	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0092	1	0	0	0	0	1	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0093	1	1	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0094	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0095	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0096	1	1	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0097	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0098	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0099	1	0	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0100	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0101	1	1	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0102	1	1	0	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0103	1	0	1	0	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0104	1	0	0	1	0	0	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	g0105	1	0	1	0	0	0	CD3E	chr11	118299730	118321173
CD3G_chr11_118339344_118360161	1/0	g0001	71	10	18	31	3	8	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0002	70	14	20	27	5	4	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0003	44	1	0	34	0	9	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0004	17	2	6	6	0	3	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0005	17	15	2	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0006	13	0	2	7	3	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0007	12	0	1	9	0	2	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0008	10	1	0	7	0	2	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0009	8	1	2	3	0	2	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0010	7	2	4	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0011	6	0	0	6	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0012	6	1	0	4	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0013	6	5	1	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0014	6	2	1	2	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0015	6	6	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/1	g0016	5	0	2	2	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0017	4	0	3	1	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0018	3	3	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0019	3	1	0	1	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0020	3	0	0	2	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0021	3	0	0	3	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0022	3	0	0	2	0	1	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0023	3	0	0	0	0	3	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0024	3	0	0	0	3	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0025	3	0	0	3	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0026	2	0	0	2	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0027	2	0	0	2	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0028	2	2	0	0	0	0	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	g0029	2	0	0	2	0	0	CD3G	chr11	118339344	118360161