JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD44_chr11_35134171_35237402	0/0	g0344	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0345	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0346	1	0	1	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0347	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0348	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0349	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0350	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0351	1	0	1	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0352	1	0	1	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0353	1	0	1	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0354	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0355	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0356	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0357	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0358	1	0	1	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0359	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0360	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0361	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0362	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0363	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0364	1	1	0	0	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0365	1	0	0	1	0	0	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	g0366	1	0	0	0	0	1	CD44	chr11	35134171	35237402
CD46_chr1_207747054_207800504	0/0	g0001	7	1	1	0	3	2	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0002	6	0	1	4	0	1	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0003	5	0	2	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0004	5	0	1	2	1	1	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0005	4	0	3	1	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0006	4	0	1	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0007	4	0	4	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0008	4	1	0	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0009	4	3	1	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0010	4	0	1	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0011	4	2	0	1	0	1	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/1	g0012	4	1	1	0	0	1	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0013	3	0	1	0	0	2	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0014	3	0	0	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0015	3	0	1	0	1	1	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0016	3	0	0	3	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0017	3	2	1	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0018	3	3	0	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0019	3	3	0	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0020	3	3	0	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0021	3	3	0	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0022	2	0	2	0	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0023	2	0	0	2	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0024	2	0	1	0	1	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0025	2	0	0	2	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0026	2	0	0	2	0	0	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	g0027	2	0	0	2	0	0	CD46	chr1	207747054	207800504