JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
CD48_chr1_160673746_160716822	0/0	g0350	1	0	0	0	1	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0351	1	0	0	1	0	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0352	1	0	0	1	0	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0353	1	0	0	1	0	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0354	1	0	0	1	0	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0355	1	0	0	0	1	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0356	1	1	0	0	0	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	g0357	1	1	0	0	0	CD48	chr1	160673746	160716822
CD4_chr12_6784528_6825799	0/0	g0001	2	0	0	2	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0002	2	2	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0003	2	2	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0004	2	0	0	2	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0005	2	0	2	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0006	2	0	0	2	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0007	2	2	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0008	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0009	1	0	0	1	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0010	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0011	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0012	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0013	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0014	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0015	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0016	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0017	1	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0018	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0019	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0020	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0021	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0022	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0023	1	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0024	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0025	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0026	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0027	1	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0028	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0029	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0030	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0031	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0032	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0033	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0034	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0035	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0036	1	0	0	0	1	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0037	1	0	0	0	1	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0038	1	0	0	1	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0039	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0040	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0041	1	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0042	1	1	0	0	0	CD4	chr12	6784528	6825799