JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD4_chr12_6784528_6825799	0/0	g0393	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0394	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0395	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0396	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0397	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0398	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0399	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0400	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0401	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0402	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0403	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0404	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0405	1	0	0	0	0	1	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0406	1	0	0	0	0	1	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0407	1	0	0	0	1	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0408	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0409	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0410	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0411	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0412	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0413	1	0	0	1	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	1/0	g0414	1	0	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0415	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0416	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0417	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0418	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0419	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0420	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0421	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0422	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0423	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0424	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0425	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0426	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0427	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0428	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0429	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0430	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0431	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0432	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0433	1	1	0	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0434	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	g0435	1	0	1	0	0	0	CD4	chr12	6784528	6825799
CD52_chr1_26312958_26325523	1/0	g0001	128	9	19	86	0	13	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/1	g0002	58	18	13	19	1	6	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0003	50	24	11	5	4	6	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0004	46	6	13	18	4	5	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0005	37	0	5	31	0	1	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0006	28	12	4	0	8	4	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0007	12	1	8	0	1	2	CD52	chr1	26312958	26325523