JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD52_chr1_26312958_26325523	0/0	g0008	7	6	1	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0009	7	2	0	4	0	1	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0010	5	4	1	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0011	4	0	0	4	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0012	3	3	0	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0013	2	0	0	2	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0014	2	0	0	2	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0015	2	2	0	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0016	2	0	0	2	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0017	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0018	1	1	0	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0019	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0020	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0021	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0022	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0023	1	1	0	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0024	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0025	1	1	0	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0026	1	0	1	0	0	0	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	g0027	1	0	0	1	0	0	CD52	chr1	26312958	26325523
CD53_chr1_110868148_110904922	0/0	g0001	26	0	8	15	1	2	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0002	18	0	0	18	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0003	18	0	7	9	2	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0004	16	0	2	12	0	2	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0005	15	7	0	6	0	2	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0006	8	8	0	0	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0007	8	0	0	8	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0008	7	0	1	6	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0009	6	0	0	6	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0010	6	0	1	4	1	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0011	5	0	0	4	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0012	5	0	2	2	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0013	5	0	2	2	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0014	5	0	1	4	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0015	4	2	2	0	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0016	4	1	0	0	1	2	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0017	4	0	0	3	1	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0018	4	0	3	0	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0019	4	0	3	0	1	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0020	4	0	0	4	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0021	4	0	0	4	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0022	3	3	0	0	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0023	3	3	0	0	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0024	3	2	1	0	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0025	3	1	1	0	1	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0026	3	0	0	3	0	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0027	3	0	0	1	2	0	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0028	3	1	1	0	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0029	3	0	1	1	0	1	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	g0030	3	0	0	3	0	0	CD53	chr1	110868148	110904922