JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD5_chr11_61097489_61132852	0/0	g0115	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0116	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0117	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0118	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0119	1	0	0	1	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0120	1	0	0	1	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0121	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0122	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0123	1	0	1	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0124	1	0	1	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0125	1	0	1	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0126	1	0	0	1	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0127	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0128	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0129	1	0	0	0	0	1	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0130	1	0	0	0	0	1	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0131	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0132	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0133	1	0	1	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0134	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0135	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0136	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0137	1	1	0	0	0	0	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	g0138	1	0	1	0	0	0	CD5	chr11	61097489	61132852
CD63_chr12_55720323_55734009	1/1	g0001	143	19	30	62	6	24	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0002	74	1	17	53	1	2	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0003	36	27	4	3	0	2	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0004	28	2	6	16	1	3	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0005	20	10	0	8	0	2	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0006	12	0	8	0	2	2	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0007	9	8	1	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0008	8	0	0	8	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0009	8	0	0	8	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0010	8	0	1	7	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0011	5	5	0	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0012	5	0	2	2	0	1	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0013	5	0	0	5	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0014	4	0	1	0	0	3	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0015	3	0	2	1	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0016	3	0	0	3	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0017	3	0	0	0	0	3	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0018	2	0	0	2	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0019	2	0	0	2	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0020	2	0	0	2	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0021	2	1	1	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0022	2	2	0	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0023	2	2	0	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0024	2	1	0	1	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0025	2	2	0	0	0	0	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	g0026	2	2	0	0	0	0	CD63	chr12	55720323	55734009