JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD6_chr11_60966680_61025377	0/0	g0253	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0254	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0255	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0256	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0257	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0258	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0259	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0260	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0261	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0262	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0263	1	0	0	1	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0264	1	0	0	0	0	1	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0265	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0266	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0267	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0268	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0269	1	0	1	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0270	1	0	0	0	1	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0271	1	0	1	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0272	1	0	0	0	1	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/1	g0273	1	0	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0274	1	0	1	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0275	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0276	1	0	1	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0277	1	0	1	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0278	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0279	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0280	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	g0281	1	1	0	0	0	0	CD6	chr11	60966680	61025377
CD70_chr19_6580839_6596150	0/1	g0001	109	12	18	65	3	10	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0002	47	14	0	30	0	3	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0003	34	0	8	17	2	7	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0004	29	7	8	10	1	3	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0005	25	0	15	0	6	4	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0006	20	0	0	19	0	1	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0007	13	0	1	8	1	3	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0008	9	1	7	0	0	1	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0009	8	1	2	2	1	2	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0010	7	0	0	7	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0011	7	2	4	0	1	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0012	6	0	0	5	0	1	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0013	6	0	0	6	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0014	6	0	0	6	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0015	4	4	0	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0016	4	3	1	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0017	4	4	0	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0018	4	4	0	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0019	4	3	1	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0020	3	0	3	0	0	0	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	g0021	3	3	0	0	0	0	CD70	chr19	6580839	6596150