JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD7_chr17_82309873_82322608	0/0	g0024	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0025	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0026	1	0	0	0	1	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0027	1	0	0	1	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0028	1	0	0	0	0	1	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0029	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0030	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0031	1	0	0	1	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0032	1	0	0	1	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0033	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0034	1	0	0	0	1	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0035	1	0	1	0	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0036	1	0	0	1	0	0	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	g0037	1	1	0	0	0	0	CD7	chr17	82309873	82322608
CD80_chr3_119519293_119564614	0/0	g0001	6	5	1	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0002	3	0	0	3	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0003	3	0	0	3	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0004	3	0	2	0	0	1	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0005	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0006	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0007	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0008	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0009	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0010	2	0	2	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0011	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0012	2	0	2	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0013	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0014	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0015	2	0	0	0	1	1	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0016	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0017	2	0	2	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0018	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0019	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0020	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0021	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0022	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0023	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0024	2	0	0	2	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0025	2	0	2	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0026	2	0	2	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0027	2	0	0	0	0	2	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0028	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0029	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0030	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0031	2	2	0	0	0	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0032	2	0	0	1	0	1	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0033	2	0	0	0	2	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0034	2	0	1	0	0	1	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0035	2	0	0	0	2	0	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	g0036	2	0	0	2	0	0	CD80	chr3	119519293	119564614