JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD82_chr11_44560663_44625358	0/0	g0351	1	1	0	0	0	0	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	g0352	1	1	0	0	0	0	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	g0353	1	0	0	1	0	0	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	g0354	1	0	0	1	0	0	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	g0355	1	0	0	1	0	0	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	g0356	1	0	0	1	0	0	CD82	chr11	44560663	44625358
CD83_chr6_14112772_14141906	0/0	g0001	34	0	1	28	3	2	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0002	27	9	7	7	3	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0003	18	0	7	5	0	6	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0004	12	0	3	8	1	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0005	12	3	0	7	1	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0006	10	0	6	0	2	2	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0007	9	0	0	7	0	2	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0008	9	3	5	0	0	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0009	8	0	0	8	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0010	8	0	0	8	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0011	7	1	1	4	0	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0012	7	0	1	6	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0013	7	5	2	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0014	6	2	2	2	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0015	6	0	6	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0016	6	6	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0017	5	0	0	5	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0018	5	0	0	5	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0019	5	1	2	0	1	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0020	5	0	1	3	0	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0021	4	0	0	4	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0022	4	0	0	4	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0023	4	2	2	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0024	4	0	0	2	0	2	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0025	4	0	0	4	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0026	4	0	0	4	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0027	4	4	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0028	4	3	1	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0029	3	0	0	3	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0030	3	3	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0031	3	0	1	2	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0032	3	0	0	3	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0033	3	0	2	0	0	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0034	3	3	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0035	3	3	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0036	2	2	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0037	2	0	0	2	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0038	2	0	0	2	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	1/0	g0039	2	1	0	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0040	2	0	0	0	1	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0041	2	0	0	0	1	1	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0042	2	0	0	0	0	2	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0043	2	0	2	0	0	0	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	g0044	2	0	2	0	0	0	CD83	chr6	14112772	14141906