JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD86_chr3_122050362_122126136	0/0	g0274	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0275	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0276	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0277	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0278	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0279	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0280	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0281	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0282	1	0	0	1	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0283	1	0	1	0	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0284	1	0	1	0	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0285	1	0	0	0	0	1	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0286	1	0	1	0	0	0	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	g0287	1	0	1	0	0	0	CD86	chr3	122050362	122126136
CD8A_chr2_86779610_86795913	0/1	g0001	82	11	10	53	3	4	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0002	34	6	11	7	3	7	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0003	21	0	11	5	1	4	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0004	18	0	4	13	0	1	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0005	13	8	0	5	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0006	11	2	2	2	2	3	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0007	11	9	2	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0008	9	1	2	3	3	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0009	7	6	1	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0010	5	0	0	2	0	3	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0011	5	0	0	5	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0012	5	0	4	0	1	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0013	5	0	1	4	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0014	4	3	0	0	0	1	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0015	4	4	0	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0016	4	0	0	4	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0017	4	0	0	4	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0018	4	4	0	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0019	4	0	0	3	0	1	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0020	3	0	2	0	0	1	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0021	3	2	0	1	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0022	3	0	3	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0023	3	0	0	3	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0024	3	0	0	3	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0025	3	2	1	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0026	2	2	0	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0027	2	0	2	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0028	2	1	1	0	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0029	2	0	0	2	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0030	2	0	0	2	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0031	2	0	1	1	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0032	2	0	0	2	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0033	2	0	0	2	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	1/0	g0034	2	0	0	0	0	1	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0035	2	0	1	1	0	0	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	g0036	2	0	0	1	0	1	CD8A	chr2	86779610	86795913