JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDADC1_chr13_49242925_49298485	0/0	g0354	1	1	0	0	0	0	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	g0355	1	1	0	0	0	0	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	g0356	1	1	0	0	0	0	CDADC1	chr13	49242925	49298485
CDAN1_chr15_42718544_42742128	1/1	g0001	60	1	14	32	4	7	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0002	18	1	2	12	0	3	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0003	10	0	5	0	1	4	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0004	10	2	0	6	0	2	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0005	10	10	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0006	8	0	3	5	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0007	8	8	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0008	7	0	0	6	0	1	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0009	7	3	3	0	1	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0010	7	0	0	7	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0011	7	0	0	7	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0012	7	0	1	1	2	3	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0013	7	5	0	0	0	2	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0014	7	0	0	6	0	1	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0015	5	0	1	4	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0016	4	0	0	4	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0017	4	0	0	3	0	1	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0018	4	1	1	1	0	1	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0019	4	4	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0020	3	0	3	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0021	3	0	0	3	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0022	3	0	0	3	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0023	3	3	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0024	3	3	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0025	3	0	0	3	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0026	3	3	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0027	3	2	1	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0028	2	0	0	0	0	2	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0029	2	0	2	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0030	2	0	0	2	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0031	2	0	0	0	0	2	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0032	2	0	0	0	2	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0033	2	0	0	2	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0034	2	0	0	2	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0035	2	1	1	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0036	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0037	2	0	0	2	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0038	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0039	2	0	0	2	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0040	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0041	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0042	2	1	1	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0043	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0044	2	2	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0045	1	0	0	0	1	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0046	1	1	0	0	0	0	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	g0047	1	1	0	0	0	0	CDAN1	chr15	42718544	42742128