JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC20_chr1_43353981_43368203	0/0	g0011	2	0	0	2	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0012	2	0	0	2	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0013	1	0	0	1	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0014	1	0	0	1	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0015	1	0	0	1	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0016	1	1	0	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0017	1	1	0	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0018	1	0	0	0	0	1	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0019	1	1	0	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0020	1	1	0	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0021	1	0	1	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0022	1	1	0	0	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0023	1	0	0	1	0	0	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	g0024	1	0	0	1	0	0	CDC20	chr1	43353981	43368203
CDC23_chr5_138182650_138218323	0/0	g0001	30	1	4	18	1	6	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0002	23	11	3	7	0	2	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0003	20	0	1	19	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0004	8	2	2	0	0	4	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0005	6	1	4	0	1	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0006	5	0	0	5	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0007	5	5	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0008	5	0	0	5	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0009	5	0	5	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0010	5	0	0	5	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/1	g0011	5	0	1	1	2	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	1/0	g0012	4	2	1	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0013	4	4	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0014	4	0	0	4	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0015	3	0	3	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0016	3	0	0	0	0	3	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0017	3	3	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0018	3	3	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0019	3	3	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0020	3	0	0	3	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0021	3	0	1	1	0	1	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0022	3	0	3	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0023	3	3	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0024	3	3	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0025	3	0	3	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0026	3	0	0	0	0	3	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0027	2	0	1	0	1	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0028	2	2	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0029	2	2	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0030	2	0	2	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0031	2	1	1	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0032	2	2	0	0	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0033	2	0	0	0	2	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0034	2	0	1	0	1	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0035	2	0	0	2	0	0	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	g0036	2	0	0	2	0	0	CDC23	chr5	138182650	138218323