JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC27_chr17_47112703_47194295	0/0	g0331	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0332	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0333	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0334	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0335	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0336	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0337	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0338	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0339	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0340	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0341	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0342	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0343	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0344	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0345	1	0	0	1	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0346	1	0	1	0	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0347	1	0	0	0	0	1	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0348	1	0	0	0	0	1	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0349	1	0	1	0	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0350	1	0	1	0	0	0	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	g0351	1	1	0	0	0	0	CDC27	chr17	47112703	47194295
CDC34_chr19_526760_547087	0/0	g0001	28	0	3	19	2	4	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0002	20	1	4	13	2	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0003	18	0	2	13	1	2	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/1	g0004	10	5	2	1	0	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0005	7	1	0	4	0	2	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0006	7	1	0	6	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0007	7	7	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0008	6	0	6	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0009	5	5	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0010	5	5	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0011	4	0	0	4	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0012	4	0	1	3	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0013	4	0	0	2	1	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0014	3	3	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0015	3	3	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0016	3	1	1	0	1	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0017	3	0	1	2	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0018	3	0	0	3	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0019	3	1	1	0	1	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0020	3	0	0	2	0	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0021	3	0	0	2	0	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0022	2	0	0	0	2	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0023	2	2	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0024	2	2	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0025	2	2	0	0	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0026	2	1	0	0	0	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0027	2	0	1	0	0	1	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0028	2	0	0	2	0	0	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	g0029	2	2	0	0	0	0	CDC34	chr19	526760	547087