JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC42EP1_chr22_37555480_37574405	0/0	g0195	1	0	1	0	0	0	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0196	1	0	0	0	0	1	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0197	1	0	0	1	0	0	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0198	1	0	0	1	0	0	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0199	1	0	0	1	0	0	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0200	1	1	0	0	0	0	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	g0201	1	0	0	0	0	1	CDC42EP1	chr22	37555480	37574405
CDC42EP2_chr11_65309866_65327417	0/0	g0001	63	9	15	22	6	11	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/1	g0002	44	5	10	20	2	6	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0003	15	4	2	8	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0004	14	3	5	2	1	3	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0005	14	0	3	5	3	3	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0006	10	5	4	0	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0007	8	5	0	3	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0008	8	0	3	4	1	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0009	7	7	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0010	6	0	0	6	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0011	5	0	0	5	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0012	5	4	0	0	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0013	4	4	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0014	4	0	0	4	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0015	4	0	0	4	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0016	4	3	1	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0017	4	0	2	0	1	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0018	3	1	1	0	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0019	3	3	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0020	3	2	1	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0021	3	3	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0022	3	3	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0023	3	0	0	3	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0024	3	3	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	1/0	g0025	3	1	1	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0026	2	2	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0027	2	0	0	2	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0028	2	0	0	2	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0029	2	2	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0030	2	0	1	0	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0031	2	0	0	0	1	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0032	2	2	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0033	2	2	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0034	2	2	0	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0035	2	0	0	2	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0036	2	0	0	2	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0037	2	0	0	1	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0038	2	0	0	2	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0039	2	0	2	0	0	0	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0040	2	0	0	1	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0041	2	0	1	0	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0042	2	0	0	1	0	1	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	g0043	2	0	2	0	0	0	CDC42EP2	chr11	65309866	65327417