JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC42EP4_chr17_73278624_73317001	0/0	g0360	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0361	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0362	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0363	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0364	1	1	0	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0365	1	0	1	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0366	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0367	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0368	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0369	1	0	0	0	0	1	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0370	1	0	1	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0371	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0372	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0373	1	0	1	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0374	1	0	1	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0375	1	0	1	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0376	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0377	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0378	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0379	1	0	0	0	0	1	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0380	1	1	0	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0381	1	0	0	0	0	1	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0382	1	0	0	0	0	1	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0383	1	1	0	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0384	1	1	0	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0385	1	0	0	1	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	g0386	1	1	0	0	0	0	CDC42EP4	chr17	73278624	73317001
CDC42EP5_chr19_54460026_54478296	0/0	g0001	36	9	11	6	2	8	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0002	17	2	0	14	0	1	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0003	16	0	1	14	0	1	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0004	12	0	0	9	0	3	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0005	11	0	3	4	1	3	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0006	10	0	5	1	1	3	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0007	9	1	0	8	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0008	7	0	0	7	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0009	5	5	0	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0010	5	0	0	5	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0011	4	0	4	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0012	4	4	0	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0013	4	3	1	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0014	4	2	0	2	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0015	4	0	0	4	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0016	4	0	1	3	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0017	4	0	1	2	1	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0018	4	0	0	4	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0019	4	0	3	0	0	1	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0020	3	3	0	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0021	3	3	0	0	0	0	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0022	3	1	0	0	0	2	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0023	3	0	0	3	0	0	CDC42EP5	chr19	54460026	54478296