JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC42EP5_chr19_54460026_54478296	0/0	g0224	1	0	0	0	0	1	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	g0225	1	0	0	1	0	0	CDC42EP5	chr19	54460026	54478296
CDC42SE1_chr1_151045985_151064622	0/0	g0001	79	2	14	54	1	8	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0002	33	0	6	21	0	6	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0003	14	5	7	0	1	1	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0004	12	0	2	3	4	3	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0005	9	1	0	8	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0006	9	4	0	2	1	2	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0007	6	1	4	0	1	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0008	6	0	0	6	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0009	5	0	2	0	0	3	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0010	4	4	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0011	4	1	0	2	1	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0012	4	3	1	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0013	4	4	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0014	4	4	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0015	3	0	2	0	1	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0016	3	0	3	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0017	3	3	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0018	3	3	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0019	3	0	0	3	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0020	3	0	2	0	0	1	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0021	3	3	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0022	3	2	1	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0023	2	0	0	1	1	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0024	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0025	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0026	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0027	2	1	0	0	1	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0028	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0029	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0030	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0031	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0032	2	0	0	0	1	1	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0033	2	0	2	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0034	2	0	0	2	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0035	2	0	0	1	0	1	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0036	2	0	0	2	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0037	2	0	0	0	0	2	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0038	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0039	2	1	1	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0040	2	2	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0041	2	0	1	1	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0042	1	0	1	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0043	1	1	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0044	1	1	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0045	1	1	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0046	1	1	0	0	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0047	1	0	0	1	0	0	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	g0048	1	0	0	1	0	0	CDC42SE1	chr1	151045985	151064622