JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDC5L_chr6_44382706_44455425	0/0	g0315	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0316	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0317	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0318	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0319	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0320	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0321	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0322	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0323	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0324	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0325	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0326	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0327	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0328	1	0	0	0	0	1	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0329	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0330	1	0	0	0	1	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0331	1	0	0	0	0	1	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0332	1	0	0	0	0	1	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0333	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0334	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0335	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0336	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0337	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0338	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0339	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0340	1	0	0	1	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0341	1	1	0	0	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0342	1	1	0	0	0	0	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	g0343	1	1	0	0	0	0	CDC5L	chr6	44382706	44455425
CDC6_chr17_40282879_40309657	1/0	g0001	72	8	11	39	0	13	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0002	41	9	10	17	1	4	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0003	19	0	3	16	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0004	10	0	0	9	0	1	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/1	g0005	9	0	1	6	1	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0006	9	1	1	7	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0007	8	7	1	0	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0008	4	4	0	0	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0009	4	0	3	0	1	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0010	4	2	0	2	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0011	4	0	0	4	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0012	4	0	0	4	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0013	4	4	0	0	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0014	4	4	0	0	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0015	4	3	0	0	1	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0016	4	1	1	2	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0017	3	1	1	1	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0018	3	1	0	2	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0019	3	2	0	1	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0020	3	0	0	3	0	0	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	g0021	3	1	0	2	0	0	CDC6	chr17	40282879	40309657