JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDCA2_chr8_25454233_25512911	0/0	g0289	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0290	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0291	1	0	0	0	0	1	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0292	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0293	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0294	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0295	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0296	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0297	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0298	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0299	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0300	1	0	1	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0301	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0302	1	0	0	0	0	1	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0303	1	0	0	0	0	1	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0304	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0305	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0306	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0307	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0308	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	g0309	1	1	0	0	0	0	CDCA2	chr8	25454233	25512911
CDCA3_chr12_6843828_6856286	1/0	g0001	154	31	41	48	11	22	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/1	g0002	118	38	25	35	4	15	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0003	49	0	0	49	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0004	48	3	5	32	0	8	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0005	7	7	0	0	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0006	4	1	0	2	0	1	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0007	3	3	0	0	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0008	3	0	0	3	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0009	2	0	1	0	1	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0010	2	2	0	0	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0011	1	0	0	1	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0012	1	0	0	1	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0013	1	0	0	1	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0014	1	1	0	0	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0015	1	0	0	1	0	0	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	g0016	1	0	0	1	0	0	CDCA3	chr12	6843828	6856286
CDCA4_chr14_105004573_105026083	0/1	g0001	83	8	25	32	6	11	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0002	67	22	14	30	0	1	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0003	52	3	5	38	1	5	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0004	16	0	0	16	0	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0005	13	1	1	5	0	6	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0006	10	0	0	10	0	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0007	8	0	1	3	0	4	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0008	6	4	0	2	0	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0009	6	0	4	0	2	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0010	6	0	1	3	1	1	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0011	5	0	1	4	0	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0012	5	0	0	5	0	0	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	g0013	5	5	0	0	0	0	CDCA4	chr14	105004573	105026083