JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDCA7_chr2_173349872_173373997	0/0	g0111	1	0	0	0	1	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0112	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0113	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0114	1	0	1	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0115	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0116	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0117	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0118	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0119	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0120	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0121	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0122	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0123	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0124	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0125	1	0	1	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0126	1	0	0	1	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0127	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0128	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0129	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0130	1	0	0	0	1	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0131	1	0	0	0	0	1	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0132	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0133	1	0	0	0	0	1	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0134	1	0	0	0	1	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0135	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0136	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0137	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0138	1	0	1	0	0	0	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0139	1	0	0	0	0	1	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	g0140	1	1	0	0	0	0	CDCA7	chr2	173349872	173373997
CDCA8_chr1_37687516_37714719	0/0	g0001	41	0	7	27	2	5	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0002	18	0	4	8	1	5	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0003	16	0	5	6	2	3	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0004	16	4	1	11	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0005	12	0	3	7	0	2	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0006	9	9	0	0	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0007	8	8	0	0	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0008	8	0	0	8	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0009	7	0	0	5	0	2	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0010	7	6	1	0	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	1/0	g0011	6	0	4	0	0	1	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0012	5	0	4	0	0	1	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0013	5	0	1	3	1	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0014	5	0	1	4	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0015	5	0	0	4	0	1	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0016	4	3	1	0	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0017	4	0	0	4	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0018	4	0	0	4	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0019	4	0	4	0	0	0	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	g0020	3	1	1	0	0	1	CDCA8	chr1	37687516	37714719