JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDCP1_chr3_45077277_45151378	0/0	g0360	1	0	0	1	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0361	1	0	0	1	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0362	1	0	0	1	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0363	1	0	0	1	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0364	1	0	0	1	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0365	1	0	0	0	0	1	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0366	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0367	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0368	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0369	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0370	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0371	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0372	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0373	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0374	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0375	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0376	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0377	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0378	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0379	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0380	1	1	0	0	0	0	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0381	1	0	0	0	0	1	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	g0382	1	0	1	0	0	0	CDCP1	chr3	45077277	45151378
CDCP2_chr1_54127687_54158000	0/1	g0001	18	0	11	1	2	3	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0002	17	3	0	11	0	3	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0003	15	0	1	13	0	1	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0004	10	0	3	7	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0005	7	0	6	1	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0006	7	0	0	7	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0007	6	0	2	0	3	1	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0008	5	5	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0009	5	0	3	0	2	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0010	5	5	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0011	5	5	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0012	4	0	0	4	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0013	4	0	4	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0014	3	3	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0015	3	0	0	3	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0016	3	0	0	2	0	1	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0017	3	0	0	3	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0018	3	0	0	3	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0019	3	3	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0020	3	0	2	0	0	1	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0021	2	2	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0022	2	0	0	2	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0023	2	0	0	0	0	2	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0024	2	0	0	2	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0025	2	2	0	0	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0026	2	0	0	2	0	0	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	g0027	2	0	0	0	1	1	CDCP2	chr1	54127687	54158000