JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDH13_chr16_82621969_83805640	0/0	g0081	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0082	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0083	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0084	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0085	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0086	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0087	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0088	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0089	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0090	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0091	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0092	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0093	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0094	1	0	0	0	0	1	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0095	1	0	0	0	0	1	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0096	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0097	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0098	1	0	0	1	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0099	1	0	0	0	0	1	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0100	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0101	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0102	1	0	0	1	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0103	1	0	0	1	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0104	1	0	0	0	0	1	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0105	1	0	1	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0106	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0107	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0108	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0109	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	g0110	1	1	0	0	0	0	CDH13	chr16	82621969	83805640
CDH15_chr16_89166748_89200492	0/0	g0001	12	0	3	5	0	4	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0002	10	0	0	10	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0003	8	0	5	3	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0004	8	2	2	4	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0005	7	6	1	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0006	6	0	0	6	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0007	6	6	0	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0008	4	0	2	1	0	1	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0009	4	1	2	0	0	1	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0010	4	0	4	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0011	3	0	2	0	1	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0012	3	0	0	3	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0013	3	0	0	3	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0014	3	0	0	3	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0015	3	0	3	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0016	3	2	1	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0017	3	0	2	1	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0018	3	3	0	0	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0019	3	0	0	3	0	0	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	g0020	2	0	0	0	0	2	CDH15	chr16	89166748	89200492