JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
CDH16_chr16_66903122_66923885	0/0	g0065	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0066	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0067	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0068	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0069	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0070	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0071	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0072	1	0	0	0	1	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0073	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0074	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0075	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0076	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0077	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0078	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0079	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0080	1	0	0	1	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0081	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0082	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0083	1	0	0	0	1	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0084	1	0	0	0	1	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0085	1	0	0	0	1	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0086	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0087	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0088	1	0	1	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0089	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0090	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0091	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0092	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0093	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0094	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0095	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	g0096	1	1	0	0	0	CDH16	chr16	66903122	66923885
CDH17_chr8_94122162_94213555	0/0	g0001	2	2	0	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0002	2	0	0	2	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0003	2	0	2	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0004	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0005	1	0	1	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0006	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0007	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0008	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0009	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0010	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0011	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0012	1	0	0	1	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0013	1	1	0	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0014	1	0	1	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0015	1	1	0	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0016	1	1	0	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0017	1	1	0	0	0	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	g0018	1	0	0	1	0	CDH17	chr8	94122162	94213555