JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDH23_chr10_71391920_71820947	0/0	g0181	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0182	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0183	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0184	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0185	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0186	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0187	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0188	1	0	1	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0189	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0190	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0191	1	0	1	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0192	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0193	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0194	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0195	1	1	0	0	0	0	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	g0196	1	0	0	1	0	0	CDH23	chr10	71391920	71820947
CDH24_chr14_23042067_23062520	0/1	g0001	90	5	22	51	3	8	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	1/0	g0002	21	0	4	15	1	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0003	14	0	4	7	0	3	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0004	14	6	4	4	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0005	11	0	0	11	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0006	10	0	0	10	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0007	9	1	4	0	1	3	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0008	7	0	2	0	1	4	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0009	7	0	0	7	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0010	6	0	0	5	0	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0011	6	0	0	5	0	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0012	6	0	5	0	0	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0013	6	0	3	0	2	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0014	6	0	0	4	1	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0015	5	0	3	2	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0016	4	0	0	4	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0017	4	4	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0018	4	3	1	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0019	4	0	4	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0020	4	0	0	4	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0021	3	3	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0022	3	0	0	3	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0023	3	2	0	1	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0024	3	0	0	3	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0025	3	0	2	0	0	1	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0026	3	0	3	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0027	3	0	2	0	1	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0028	3	0	3	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0029	3	3	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0030	3	3	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0031	3	3	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0032	2	2	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0033	2	2	0	0	0	0	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	g0034	2	2	0	0	0	0	CDH24	chr14	23042067	23062520