JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDH9_chr5_26875597_27043586	0/0	g0210	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0211	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0212	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0213	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0214	1	0	0	0	0	1	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0215	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0216	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0217	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0218	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0219	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0220	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0221	1	0	1	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0222	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0223	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0224	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0225	1	0	1	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0226	1	0	0	0	0	1	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0227	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0228	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0229	1	0	1	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0230	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0231	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0232	1	0	1	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0233	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0234	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0235	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0236	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0237	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0238	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0239	1	1	0	0	0	0	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	g0240	1	0	0	1	0	0	CDH9	chr5	26875597	27043586
CDHR1_chr10_84189537_84223694	0/0	g0001	35	0	7	20	2	6	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0002	17	1	8	0	3	5	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0003	15	1	5	8	0	1	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0004	11	1	0	6	1	3	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	1/0	g0005	9	1	1	0	2	4	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0006	8	0	0	8	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0007	8	8	0	0	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0008	8	0	0	8	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0009	7	0	0	7	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0010	5	0	1	3	0	1	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0011	5	5	0	0	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0012	5	0	0	5	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0013	4	0	0	0	0	4	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0014	4	0	2	2	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0015	4	0	0	4	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/1	g0016	4	0	3	0	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0017	4	4	0	0	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0018	4	3	1	0	0	0	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	g0019	4	0	1	2	0	1	CDHR1	chr10	84189537	84223694