JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDHR5_chr11_611583_629955	0/0	g0116	1	0	1	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0117	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0118	1	0	1	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0119	1	0	0	0	0	1	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0120	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0121	1	0	0	0	1	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0122	1	1	0	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0123	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0124	1	1	0	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0125	1	0	1	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0126	1	0	1	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0127	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0128	1	0	1	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0129	1	0	0	0	0	1	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0130	1	0	0	0	0	1	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0131	1	1	0	0	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0132	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0133	1	0	0	0	0	1	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	g0134	1	0	0	1	0	0	CDHR5	chr11	611583	629955
CDIN1_chr15_36574626_36815244	0/0	g0001	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0002	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0003	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0004	1	0	0	0	0	1	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0005	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0006	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0007	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0008	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0009	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0010	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0011	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0012	1	0	0	0	1	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0013	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0014	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0015	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0016	1	0	0	0	0	1	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0017	1	1	0	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0018	1	0	0	0	1	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0019	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0020	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0021	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0022	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0023	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0024	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0025	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0026	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0027	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0028	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0029	1	0	1	0	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0030	1	0	0	1	0	0	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	g0031	1	0	0	0	0	1	CDIN1	chr15	36574626	36815244