JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDIPT_chr16_29853357_29868226	0/0	g0008	3	1	2	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0009	3	0	1	0	0	2	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0010	3	3	0	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0011	2	0	2	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0012	2	0	0	0	0	2	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0013	2	0	0	0	0	2	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0014	2	0	0	0	2	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0015	1	0	0	1	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0016	1	0	0	0	1	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0017	1	0	0	0	0	1	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0018	1	0	0	0	0	1	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0019	1	0	0	1	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0020	1	0	0	0	0	1	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0021	1	1	0	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0022	1	0	0	0	1	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0023	1	1	0	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0024	1	0	0	0	1	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0025	1	0	0	1	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0026	1	1	0	0	0	0	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	g0027	1	0	0	0	0	1	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/1	g0028	1	0	0	0	0	0	CDIPT	chr16	29853357	29868226
CDK10_chr16_89681689_89701354	0/1	g0001	56	0	4	45	1	5	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0002	44	0	4	31	0	9	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0003	35	12	5	13	0	5	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0004	25	3	10	0	7	5	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0005	23	0	0	21	0	2	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0006	13	5	1	4	0	3	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0007	11	8	3	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0008	10	1	9	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	1/0	g0009	8	5	2	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0010	8	0	4	1	1	2	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0011	7	7	0	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0012	7	0	5	0	2	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0013	6	6	0	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0014	6	0	4	0	0	2	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0015	6	0	0	5	0	1	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0016	6	0	0	5	0	1	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0017	5	0	0	5	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0018	5	0	0	5	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0019	5	0	1	4	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0020	5	0	0	0	1	4	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0021	4	4	0	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0022	4	0	0	0	1	3	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0023	4	1	0	3	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0024	4	3	1	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0025	4	3	1	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0026	3	0	3	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0027	3	3	0	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0028	3	3	0	0	0	0	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	g0029	2	0	1	0	1	0	CDK10	chr16	89681689	89701354