JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADAD2_chr16_84186157_84202166	0/0	g0061	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0062	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0063	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0064	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0065	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0066	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0067	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0068	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0069	1	0	0	0	0	1	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0070	1	0	0	1	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0071	1	0	0	0	0	1	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0072	1	0	1	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0073	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0074	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0075	1	1	0	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0076	1	0	1	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0077	1	0	1	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0078	1	0	1	0	0	0	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	g0079	1	0	0	0	0	1	ADAD2	chr16	84186157	84202166
ADAL_chr15_43325672_43359569	0/0	g0001	29	21	1	1	1	5	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0002	14	0	4	8	0	2	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0003	14	0	0	14	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0004	12	0	0	12	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0005	10	0	0	10	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0006	9	0	4	5	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0007	6	0	1	5	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0008	6	1	2	3	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0009	6	0	1	1	2	2	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0010	6	1	2	1	0	2	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/1	g0011	5	0	0	2	2	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0012	5	0	0	5	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0013	5	0	0	4	0	1	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0014	5	2	0	0	0	3	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0015	5	0	0	5	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0016	5	0	3	2	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0017	4	0	2	2	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0018	4	0	0	4	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0019	4	4	0	0	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0020	4	1	0	3	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0021	4	0	3	0	0	1	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0022	3	1	1	0	0	1	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0023	3	0	0	0	0	3	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0024	3	0	0	3	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0025	3	1	0	0	2	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0026	3	0	0	3	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0027	3	0	0	3	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0028	2	2	0	0	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0029	2	0	0	2	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0030	2	0	0	2	0	0	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	g0031	2	0	0	1	0	1	ADAL	chr15	43325672	43359569