JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK15_chr2_201801537_201900550	0/0	g0290	1	0	0	1	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0291	1	0	0	1	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0292	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0293	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0294	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0295	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/1	g0296	1	0	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0297	1	0	0	0	0	1	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0298	1	0	0	0	0	1	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0299	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0300	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0301	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0302	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0303	1	0	0	0	1	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0304	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0305	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0306	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0307	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0308	1	0	0	0	1	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0309	1	0	0	0	0	1	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0310	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0311	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0312	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0313	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0314	1	0	1	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0315	1	1	0	0	0	0	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	g0316	1	0	0	0	0	1	CDK15	chr2	201801537	201900550
CDK16_chrX_47213681_47234997	0/1	g0001	58	9	8	32	1	7	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	1/0	g0002	37	8	6	14	1	7	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0003	25	3	6	13	3	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0004	13	13	0	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0005	13	1	1	8	1	2	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0006	10	8	2	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0007	8	0	0	8	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0008	7	6	1	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0009	7	0	7	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0010	6	0	0	6	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0011	6	0	0	5	0	1	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0012	5	0	2	0	1	2	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0013	5	0	0	5	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0014	5	1	1	2	0	1	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0015	4	4	0	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0016	4	0	3	1	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0017	4	0	0	4	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0018	4	0	0	4	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0019	3	0	2	0	0	1	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0020	3	1	0	1	0	1	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0021	2	2	0	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0022	2	1	1	0	0	0	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	g0023	2	0	0	2	0	0	CDK16	chrX	47213681	47234997