JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK1_chr10_60773478_60799852	0/0	g0113	1	0	0	0	1	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0114	1	0	0	0	1	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0115	1	0	1	0	0	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0116	1	0	0	1	0	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0117	1	0	0	1	0	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0118	1	1	0	0	0	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0119	1	0	0	1	0	0	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	g0120	1	0	0	1	0	0	CDK1	chr10	60773478	60799852
CDK20_chr9_87961441_87979533	0/1	g0001	92	16	22	38	4	11	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	1/0	g0002	75	5	10	50	1	8	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0003	29	0	3	24	0	2	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0004	23	0	1	10	1	11	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0005	23	0	4	19	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0006	15	12	1	0	2	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0007	15	2	10	0	3	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0008	15	0	0	14	0	1	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0009	12	0	0	12	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0010	10	10	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0011	10	0	0	10	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0012	4	0	3	0	1	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0013	4	4	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0014	4	4	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0015	3	0	1	0	0	2	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0016	3	1	2	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0017	3	3	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0018	3	0	0	3	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0019	3	0	0	3	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0020	3	0	0	3	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0021	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0022	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0023	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0024	2	0	0	2	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0025	2	0	2	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0026	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0027	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0028	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0029	2	1	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0030	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0031	2	2	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0032	2	0	2	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0033	2	0	0	2	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0034	2	0	0	2	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0035	1	1	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0036	1	0	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0037	1	0	1	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0038	1	0	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0039	1	0	0	0	0	1	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0040	1	0	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0041	1	0	0	0	0	1	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0042	1	0	0	0	0	1	CDK20	chr9	87961441	87979533