JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK20_chr9_87961441_87979533	0/0	g0093	1	0	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0094	1	0	0	1	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0095	1	1	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0096	1	1	0	0	0	0	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	g0097	1	0	0	0	0	1	CDK20	chr9	87961441	87979533
CDK2AP1_chr12_123255976_123276856	0/0	g0001	73	1	19	35	2	16	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0002	15	0	2	13	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0003	13	0	7	0	6	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0004	10	9	1	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0005	10	0	1	8	0	1	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0006	8	8	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0007	7	0	0	3	0	4	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0008	6	6	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0009	5	0	0	5	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0010	5	0	2	3	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0011	5	1	3	0	1	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0012	5	0	2	0	3	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0013	4	4	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0014	4	0	3	0	0	1	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0015	4	1	2	0	1	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0016	4	0	0	4	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0017	4	0	0	4	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0018	3	0	0	2	1	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0019	3	0	0	3	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0020	3	0	0	3	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0021	3	0	3	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0022	3	3	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0023	3	0	0	3	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0024	3	0	0	0	0	3	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0025	2	0	0	1	0	1	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0026	2	0	0	2	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0027	2	0	0	2	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0028	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/1	g0029	2	0	0	0	0	1	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0030	2	0	1	0	1	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0031	2	0	1	0	1	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0032	2	0	0	0	0	2	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	1/0	g0033	2	1	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0034	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0035	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0036	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0037	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0038	2	2	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0039	2	0	1	1	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0040	2	0	0	0	0	2	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0041	1	1	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0042	1	0	0	0	0	1	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0043	1	0	1	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0044	1	1	0	0	0	0	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	g0045	1	0	1	0	0	0	CDK2AP1	chr12	123255976	123276856