JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK2AP2_chr11_67501497_67513162	0/0	g0013	1	1	0	0	0	0	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	g0014	1	0	0	1	0	0	CDK2AP2	chr11	67501497	67513162
CDK2_chr12_55961830_55977789	1/1	g0001	194	31	46	84	12	19	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0002	44	12	11	16	0	5	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0003	39	2	17	13	3	4	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0004	28	0	0	28	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0005	11	5	3	0	1	2	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0006	11	10	1	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0007	10	2	1	5	0	2	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0008	9	1	4	2	1	1	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0009	7	7	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0010	5	3	1	0	0	1	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0011	4	4	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0012	4	0	0	4	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0013	4	0	0	4	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0014	4	1	0	1	0	2	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0015	3	0	0	0	0	3	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0016	3	3	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0017	2	2	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0018	2	2	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0019	2	0	0	2	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0020	2	2	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0021	2	2	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0022	2	0	0	0	0	2	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0023	2	1	1	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0024	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0025	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0026	1	0	0	1	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0027	1	0	0	1	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0028	1	0	0	1	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0029	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0030	1	0	0	0	1	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0031	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0032	1	0	0	0	0	1	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0033	1	0	1	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0034	1	0	0	1	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0035	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0036	1	0	0	1	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0037	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0038	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	g0039	1	1	0	0	0	0	CDK2	chr12	55961830	55977789
CDK3_chr17_75995855_76010998	0/1	g0001	97	5	21	46	6	18	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	1/0	g0002	57	4	18	22	5	7	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0003	40	3	8	19	3	7	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0004	35	31	4	0	0	0	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0005	22	1	6	11	0	4	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0006	21	0	3	16	0	2	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0007	15	5	4	4	1	1	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0008	12	11	1	0	0	0	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	g0009	10	8	2	0	0	0	CDK3	chr17	75995855	76010998