JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
CDK5RAP1_chr20_33353839_33406519	0/0	g0295	1	0	0	0	1	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0296	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0297	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0298	1	0	1	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0299	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0300	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0301	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0302	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0303	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0304	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0305	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0306	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0307	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0308	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0309	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0310	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0311	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0312	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0313	1	0	0	0	1	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0314	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0315	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0316	1	0	0	0	1	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0317	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0318	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0319	1	0	0	1	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0320	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0321	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0322	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0323	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0324	1	0	1	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0325	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0326	1	1	0	0	0	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	g0327	1	0	0	0	1	CDK5RAP1	chr20	33353839	33406519
CDK5RAP2_chr9_120383875_120585167	0/0	g0001	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0002	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0003	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0004	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0005	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0006	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0007	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0008	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0009	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0010	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0011	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0012	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0013	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0014	1	1	0	0	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0015	1	0	0	1	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0016	1	0	0	1	0	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	g0017	1	0	0	1	0	CDK5RAP2	chr9	120383875	120585167