JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK5RAP3_chr17_47966113_47986781	0/0	g0086	1	0	0	0	0	1	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0087	1	1	0	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0088	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0089	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0090	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0091	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0092	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0093	1	0	0	0	0	1	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0094	1	0	1	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0095	1	0	0	0	0	1	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0096	1	0	0	1	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0097	1	0	0	0	0	1	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0098	1	0	0	0	1	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0099	1	1	0	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0100	1	0	0	0	0	1	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0101	1	0	1	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0102	1	1	0	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	g0103	1	1	0	0	0	0	CDK5RAP3	chr17	47966113	47986781
CDK5_chr7_151048815_151062897	0/0	g0001	118	16	34	55	4	9	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0002	107	11	22	55	6	13	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0003	43	7	1	31	0	4	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	1/0	g0004	18	3	1	5	2	6	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0005	17	11	3	0	1	2	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0006	12	2	3	0	3	4	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0007	11	10	1	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0008	9	0	0	9	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0009	8	8	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0010	6	5	1	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0011	5	0	0	3	2	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0012	4	2	0	2	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0013	4	3	1	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0014	4	0	0	4	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0015	3	1	0	2	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0016	3	0	0	3	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0017	2	2	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0018	2	2	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0019	2	0	0	2	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0020	2	0	0	2	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0021	2	0	0	2	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0022	2	2	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0023	2	0	2	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0024	2	2	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0025	1	0	0	1	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0026	1	0	0	1	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0027	1	1	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0028	1	0	0	1	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0029	1	0	0	1	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0030	1	0	0	0	0	1	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0031	1	1	0	0	0	0	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/0	g0032	1	1	0	0	0	0	CDK5	chr7	151048815	151062897