JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDK8_chr13_26249129_26410238	0/0	g0306	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0307	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0308	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0309	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0310	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0311	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0312	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0313	1	0	1	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0314	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0315	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0316	1	0	1	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0317	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0318	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0319	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0320	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0321	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0322	1	0	1	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0323	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	g0324	1	1	0	0	0	0	CDK8	chr13	26249129	26410238
CDK9_chr9_127781034_127795792	1/1	g0001	139	27	29	51	6	24	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0002	132	4	33	81	3	11	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0003	18	14	0	1	0	3	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0004	12	0	4	8	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0005	11	11	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0006	10	10	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0007	8	0	0	8	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0008	7	0	0	7	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0009	7	4	1	0	0	2	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0010	5	0	1	4	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0011	5	5	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0012	5	3	2	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0013	4	0	0	4	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0014	4	0	4	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0015	4	4	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0016	4	0	0	4	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0017	4	0	0	4	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0018	3	3	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0019	3	0	0	0	2	1	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0020	3	0	0	3	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0021	2	0	1	1	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0022	2	2	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0023	2	2	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0024	1	1	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0025	1	1	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0026	1	0	1	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0027	1	0	0	1	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0028	1	0	0	1	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0029	1	1	0	0	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0030	1	0	0	1	0	0	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	g0031	1	0	1	0	0	0	CDK9	chr9	127781034	127795792