JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN1A_chr6_36673714_36692332	0/0	g0359	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0360	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0361	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0362	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0363	1	0	0	1	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0364	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0365	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0366	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0367	1	0	0	1	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0368	1	0	1	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0369	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0370	1	0	0	1	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0371	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0372	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0373	1	0	1	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0374	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0375	1	0	1	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0376	1	0	1	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0377	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0378	1	0	0	0	0	1	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	g0379	1	1	0	0	0	0	CDKN1A	chr6	36673714	36692332
CDKN1B_chr12_12712368_12727369	0/0	g0001	152	33	24	71	6	18	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0002	115	4	13	80	5	13	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0003	50	9	15	16	3	7	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	1/0	g0004	26	25	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0005	22	3	3	13	1	2	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0006	10	1	5	3	1	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0007	10	9	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0008	8	0	0	7	0	1	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0009	7	0	0	7	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0010	5	0	0	5	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0011	3	3	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0012	3	0	0	3	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0013	2	0	0	2	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0014	2	0	0	2	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0015	2	0	2	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0016	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0017	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0018	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0019	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0020	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0021	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0022	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0023	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0024	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0025	1	1	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0026	1	1	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0027	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/1	g0028	1	0	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0029	1	1	0	0	0	0	CDKN1B	chr12	12712368	12727369