JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN1B_chr12_12712368_12727369	0/0	g0030	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0031	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0032	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0033	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0034	1	0	0	1	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0035	1	1	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0036	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0037	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0038	1	0	0	0	0	1	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0039	1	0	1	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	g0040	1	1	0	0	0	0	CDKN1B	chr12	12712368	12727369
CDKN1C_chr11_2878218_2890775	0/1	g0001	109	12	8	73	3	12	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0002	100	40	14	26	5	15	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0003	90	24	18	33	8	7	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0004	22	1	6	13	1	1	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0005	14	1	9	1	1	2	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0006	12	3	6	0	0	3	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0007	7	0	0	7	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0008	6	5	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0009	5	0	0	5	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0010	3	1	0	1	0	1	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0011	3	3	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0012	3	0	3	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0013	3	0	2	0	0	1	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0014	3	0	0	3	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0015	2	2	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0016	2	0	0	2	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0017	2	0	0	2	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0018	2	2	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0019	2	0	1	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0020	2	0	2	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0021	2	0	2	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0022	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0023	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0024	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0025	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0026	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0027	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0028	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0029	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0030	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0031	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0032	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0033	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0034	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0035	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0036	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0037	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0038	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0039	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775